Medical Diagnostic Php Project

Posted : admin On 19.09.2019

Clinical laboratory software open source code, free download, (Medical lab test result software), fully functional, vb 6.0 and can be converted or portable to vb.net.

Medical Diagnostic Php Project
  • A list of Medical imaging datasets. Source : https://sites.google.com/site/aacruzr/image-datasets
  • An additional, possibly overlapping list can be found at : https://github.com/beamandrew/medical-data

Multimodal databases

Php Project Downloads

  • Center for Invivo Microscopy (CIVM), Embrionic and Neonatal Mouse (H&E, MR) http://www.civm.duhs.duke.edu/devatlas/user guide: http://www.civm.duhs.duke.edu/devatlas/UserGuide.pdf
  • LONI image data archive https://ida.loni.usc.edu/services/Menu/IdaData.jsp?project=
  • Radiology (Ultrasound, Mammographs, X-Ray, CT, MRI, fMRI, etc.)
  • Collaborative Informatics and Neuroimaging Suite (COINS) https://portal.mrn.org/micis/index.php?subsite=dx
  • The Cancer Imaging Archive (TCIA) http://www.cancerimagingarchive.net/ (Collections)
  • Alzheimer’s Disease Neuroimaging Initiative (ADNI) http://adni.loni.ucla.edu/
  • The Open Access Series of Imaging Studies (OASIS) http://www.oasis-brains.org/
  • Breast Cancer Digital Repository https://bcdr.eu/
  • DDSM: Digital Database for Screening Mammography http://marathon.csee.usf.edu/Mammography/Database.html
  • The Mammographic Image Analysis Society (MIAS) mini-database http://peipa.essex.ac.uk/info/mias.html
  • Mammography Image Databases 100 or more images of mammograms with ground truth. Additional images available by request, and links to several other mammography databases are provided http://marathon.csee.usf.edu/Mammography/Database.html
  • NLM HyperDoc Visible Human Project color, CAT and MRI image samples - over 30 images http://www.nlm.nih.gov/research/visible/visible_human.html
  • CT Scans for Colon Cancer https://wiki.cancerimagingarchive.net/display/Public/CT+COLONOGRAPHY#e88604ec5c654f60a897fa77906f88a6

Histology and Histopathology (H&E, IHQ, ...)

  • The Cancer Genome Atlas (TCGA) http://cancergenome.nih.gov/https://tcga-data.nci.nih.gov/tcga/

  • International Cancer Genome Consortium http://icgc.org, (Data portal) http://dcc.icgc.org/

  • Stanford Tissue Microarray Database (TMA) http://tma.im

  • MITOS dataset http://www.ipal.cnrs.fr/event/icpr-2012

  • Cancer Image Database (caIMAGE) https://emice.nci.nih.gov/caimage

  • DPA’s Whole Slide Imaging Repository https://digitalpathologyassociation.org/whole-slide-imaging-repository

  • ITK Analysis of Large Histology Datasets http://www.na-mic.org/Wiki/index.php/ITK_Analysis_of_Large_Histology_Datasets

  • Histology Photo Album http://www.histology-world.com/photoalbum/thumbnails.php?album=52

  • Slide Library of Virtual pathology, University of Leeds http://www.virtualpathology.leeds.ac.uk/

  • Aperio Images http://images.aperio.com/

  • HAPS Histology Image Database http://hapshistology.wikifoundry.com/

  • Microscopy (Cell, Cytology, Biology, Protein, Molecular, Fluorescence, etc.)

  • BDGP images from the FlyExpress database www.flyexpress.net

  • The UCSB Bio-Segmentation Benchmark dataset http://www.bioimage.ucsb.edu/research/biosegmentation

  • Pap Smear database http://mde-lab.aegean.gr/index.php/downloads

  • Genome RNAi dataset http://www.genomernai.org/

  • Chinese Hamster Ovary cells (CHO) dataset http://www.chogenome.org/data.html

  • Locate Endogenus mouse sub-cellular organelles (END) databaset http://locate.imb.uq.edu.au/

  • 2D HeLa dataset (HeLa) dataset https://ome.grc.nia.nih.gov/iicbu2008/hela/index.html

  • Allen Brain Atlas http://www.brain-map.org/

  • 1000 Functional Connectomes Project http://fcon_1000.projects.nitrc.org/

  • The Cell Centered Database (CCDB) https://library.ucsd.edu/dc/collection/bb5940732k

  • The Encyclopedia of DNA Elements (ENCODE) http://genome.ucsc.edu/ENCODE/user guide: http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1001046

  • The Human Protein Atlas: http://www.proteinatlas.org/

  • DRIVE: Digital Retinal Images for Vessel Extraction http://www.isi.uu.nl/Research/Databases/DRIVE/ (Ground truth)

  • El Salvador Atlas of Gastrointestinal VideoEndoscopy Images and Videos of his-res of studies taken from Gastrointestinal Video endoscopy http://www.gastrointestinalatlas.com/

Databases you can use for bechmarking

  • Datasets reporting formats for pathologists http://www.rcpath.org/publications-media/publications/datasets
  • DermNet - Skin disease atlas (23 image classes and 23,000 images): http://www.dermnet.com/

State of the art / Challenges

  • Grand Challenges in Medical Image Analysis https://grand-challenge.org/
  • Challenges in global health and development problems https://grandchallenges.org/#/map
  • Current state of the art of most used computer vision datasets: Who is the best at X? http://rodrigob.github.io/are_we_there_yet/build/